January through October 2024
Abshire, N., Hauck, A.L., Walia, H. and Obata, T., 2024. Tissue-and time-dependent metabolite profiles during early grain development under normal and high night-time temperature conditions. BMC Plant Biology, 24(1), p.568.
Bai, G., Koehler-Cole, K., Scoby, D., Thapa, V.R., Basche, A. and Ge, Y., 2024. Enhancing estimation of cover crop biomass using field-based high-throughput phenotyping and machine learning models. Frontiers in Plant Science, 14, p.1277672.
Bai, G.F., Barker, B., Scoby, D., Irmak, S., Luck, J.D., Neale, C.M., Schnable, J.C., Awada, T., Kustas, W.P. and Ge, Y., 2024. High-throughput physiological phenotyping of crop evapotranspiration at the plot scale. Field Crops Research, 316, p.109507.
Barnes, E.M., Hartman, K., Chiniquy, D., Zhao, W., Liu, P., Creech, C., Schachtman, D.P. and Tringe, S.G., 2024. Abiotic stress reorganizes rhizosphere and endosphere network structure of Sorghum bicolor. Phytobiomes Journal, (ja).
Bin, Y., Russo, S.E., Zhang, J., Li, Y., Cao, H., Ye, W. and Lian, J., 2024. Functional traits are more strongly correlated with biomass than diameter growth. Journal of Ecology, 112(6), pp.1225-1239.
Cahoon, Edgar B., et al. "Sphingolipid homeostasis--how do cells know when enough is enough? Implications for plant pathogen responses." Plant Physiology (2024): kiae460.
Chai, Y.N., Qi, Y., Goren, E., Chiniquy, D., Sheflin, A.M., Tringe, S.G., Prenni, J.E., Liu, P. and Schachtman, D.P., 2024. Root-associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum. Msystems, 9(1), pp.e01190-23.
Cruz-Powell, I., Subedi, B., Kim, Y., Morales-Sánchez, D. and Cerutti, H., 2024. Post-Translational Regulation of a Bidomain Glycerol-3-Phosphate Dehydrogenase Catalyzing Glycerol Synthesis under Salinity Stress in Chlamydomonas reinhardtii. Phycology, 4(2), pp.213-234.
Dahal, S., Alvarez, S., Balboa, SJ, Hicks, LM and Rojas, CM, 2024. Defining the secondary metabolites in the Pseudomonas protegens PBL3 secretome with antagonistic activity against Burkholderia glumae. Phytopathology , (ha).
Delen, Y., Palali-Delen, S., Xu, G., Neji, M., Yang, J. and Dweikat, I., 2024. Dissecting the Genetic Architecture of Morphological Traits in Sunflower (Helianthus annuus L.). Genes, 15(7).
Dharni, J.S., Shi, Y., Zhang, C., Petersen, C., Walia, H. and Staswick, P., 2024. Growth and transcriptional response of wheat and rice to the tertiary amine BMVE. Frontiers in Plant Science, 14, p.1273620.
Feng, X., Zheng, J., Irisarri, I., Yu, H., Zheng, B., Ali, Z., de Vries, S., Keller, J., Fürst-Jansen, J.M., Dadras, A... J.P.Mower... and Zegers, J.M., 2024. Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature Genetics, pp.1-14.
Gamba, D., Lorts, C.M., Haile, A., Sahay, S., Lopez, L., Xia, T., Takou, M., Kulesza, E., Elango, D., Kerby, J., Yifru, M., Bulafu, C.E., Wondimu, T., Glowacka, K. and Lasky, J.R. (2024), The genomics and physiology of abiotic stressors associated with global elevational gradients in Arabidopsis thaliana. New Phytol.
Huanca-Nunez, N., Chazdon, R.L. and Russo, S.E., 2024. Trait-Mediated Variation in Seedling Performance in Costa Rican Successional Forests: Comparing Above-Ground, Below-Ground, and Allocation-Based Traits. Plants, 13(17), p.2378.
Hurst, J.P., Sato, S., Ferris, T., Yobi, A., Zhou, Y., Angelovici, R., Clemente, T.E. and Holding, D.R., 2024. Editing the 19 kDa alpha‐zein gene family generates non‐opaque2‐based quality protein maize. Plant Biotechnology Journal, 22(4), pp.946-959.
Hussain, W., Anumalla, M., Ismail, A.M., Walia, H., Singh, V.K., Kohli, A., Bhosale, S. and Bhardwaj, H., 2024. Revisiting FR13A for submergence tolerance: beyond the SUB1A gene. Journal of Experimental Botany, 75(18), pp.5477-5483.
Hyten, D., Happ, M., Graef, G. and Howard, R., 2024. Variable Selection Patterns Associated with Constitutive and GxE Effects for Grain Yield in a Locally Adapted Soybean Population.
Jin, H., Tross, M.C., Tan, R., Newton, L., Mural, R.V., Yang, J., Thompson, A.M. and Schnable, J.C., 2024. Imitating the “breeder's eye”: Predicting grain yield from measurements of non‐yield traits. The Plant Phenome Journal, 7(1), p.e20102.
Kenchanmane Raju, S.K., Zhang, Y., Mahboub, S., Ngu, D.W., Qiu, Y., Harmon, F.G., Schnable, J.C. and Roston, R.L., 2024. Rhythmic lipid and gene expression responses to chilling in panicoid grasses. Journal of Experimental Botany, p.erae247.
Khound, R., Rajput, S.G., Schnable, J.C., Vetriventhan, M. and Santra, D.K., 2024. Genome-wide association study reveals marker–trait associations for major agronomic traits in proso millet (Panicum miliaceum L.). Planta, 260(2), p.44.
Kim, P., Mahboob, S., Nguyen, H.T., Eastman, S., Fiala, O., Sousek, M., Gaussoin, R.E., Brungardt, J.L., Jackson-Ziems, T.A., Roston, R. and Alfano, J.R., 2024. Characterization of soybean events with enhanced expression of the Microtubule-Associated Protein 65-1 (MAP65-1). Molecular Plant-Microbe Interactions, 37(1), pp.62-71.
Korth, N., Yang, Q., Van Haute, M.J., Tross, M.C., Peng, B., Shrestha, N., Zwiener-Malcom, M., Mural, R.V., Schnable, J.C. and Benson, A.K., 2024. Genomic co-localization of variation affecting agronomic and human gut microbiome traits in a meta-analysis of diverse sorghum. G3: Genes, Genomes, Genetics, 14(9), p.jkae145.
KROMDIJK, J., GLOWACKA, K., NIYOGI, K.K., LEONELLI, L. and GABILLY, S.T., University of Illinois, 2024. Transgenic plants with increased photosynthesis efficiency and growth. U.S. Patent
Li, H., Akella, S., Engstler, C., Omini, J.J., Rodriguez, M., Obata, T., Carrie, C., Cerutti, H. and Mower, J.P., 2024. Recurrent evolutionary switches of mitochondrial cytochrome c maturation systems in Archaeplastida. Nature Communications, 15(1), p.1548.
Li, J., Ge, Y., Puntel, L.A., Heeren, D.M., Bai, G., Balboa, G.R., Gamon, J.A., Arkebauer, T.J. and Shi, Y., 2024. Integrating UAV hyperspectral data and radiative transfer model simulation to quantitatively estimate maize leaf and canopy nitrogen content. International Journal of Applied Earth Observation and Geoinformation, 129, p.103817.
Li, J., Zhang, D., Yang, F., Zhang, Q., Pan, S., Zhao, X., Zhang, Q., Han, Y., Yang, J., Wang, K. and Zhao, C., 2024. TrG2P: A transfer learning-based tool integrating multi-trait data for accurate prediction of crop yield. Plant Communications.
Li, M., Yu, H., Zhou, B., Gan, L., Li, S., Zhang, C. and Yu, B., 2024. JANUS, a spliceosome-associated protein, promotes miRNA biogenesis in Arabidopsis. Nucleic Acids Research, 52(1), pp.420-430.
Li-Beisson, Y. and Roston, R.L., 2024. Plant and Algal Lipids: In All Their States and on All Scales. Plant and Cell Physiology, 65(6), pp.823-825.
Linders, K.M., Santra, D., Schnable, J.C. and Sigmon, B., 2024. Variation in Leaf Chlorophyll Concentration in Response to Nitrogen Application Across Maize Hybrids in Contrasting Environments. Micropublication Biology, 2024.
Liu, S., Yang, J. and Wu, Z., 2024. Genomics Communications− an enabling platform to explore the boundless horizons. Genomics Communications, 1(1).
Long, S.P., Kromdijk, J., Glowacka, K., Niyogi, K.K., Leonelli, L. and Gabilly, S.T., University of Illinois, 2023. Transgenic plants with increased photosynthesis efficiency and growth. U.S. Patent 11,572,569.
Marquis, A., Hubing, V., Ziemann, C., Moriyama, E.N. and Zhang, L., 2024. The primate‐specific presence of interferon regulatory factor‐5 pseudogene 1. Journal of Medical Virology, 96(8), p.e29879.
McConaughy, S., Amundsen, K. and Hyten, D., 2024. Effects of demographic history on recombination hotspots in soybean. The Plant Journal. 119: 1030-1038.
McNichol, B.H., Wang, R., Hefner, A., Helzer, C., McMahon, S.M. and Russo, S.E., 2024. Topography‐driven microclimate gradients shape forest structure, diversity, and composition in a temperate refugial forest. Plant‐Environment Interactions, 5(3), p.e10153.
Mitu, S.M., Smith, C., Sanderman, J., Ferguson, R.R., Shepherd, K. and Ge, Y., 2024. Evaluating consistency across multiple NeoSpectra (compact Fourier transform near‐infrared) spectrometers for estimating common soil properties. Soil Science Society of America Journal.
Mower, J.P., 2024. Raison d’être of the plastid repeat. Nature Plants, pp.1-2.
Mukhtar, H., Hao, J., Xu, G., Bergmeyer, E., Ulutas, M., Yang, J. and Schachtman, D.P., 2024. Nitrogen input differentially shapes the rhizosphere microbiome diversity and composition across diverse maize lines. Biology and Fertility of Soils, pp.1-12.
Nalini Chandran, A.K., Paul, P., Dhatt, B.K., Sandhu, J., Irvin, L., Oguro, S., Shi, Y., Zhang, C. and Walia, H., 2024. Phenotypic and transcriptomic responses of diverse rice accessions to transient heat stress during early grain development. Frontiers in Plant Science, 15, p.1429697.
Nguyen, Le Thanh Dien, et al. "Project ChemicalBlooms: Collaborating with citizen scientists to survey the chemical diversity and phylogenetic distribution of plant epicuticular wax blooms." Plant Direct 8.5 (2024): e588.
Omini, J., Dele-Osibanjo, T., Kim, H., Zhang, J. and Obata, T., 2024. Is the TCA cycle malate dehydrogenase-citrate synthase metabolon an illusion?. Essays in Biochemistry, 68(2), pp.99-106.
Osinuga, Abraham, et al. "Deciphering sphingolipid biosynthesis dynamics in Arabidopsis thaliana cell cultures: Quantitative analysis amid data variability." Iscience 27.9 (2024).
Palali Delen, S., Lee, J. and Yang, J., 2024. Improving the metal composition of plants for reduced Cd and increased Zn content: molecular mechanisms and genetic regulations. Cereal Research Communications, 52(3), pp.901-918.
Pattee, G., Thomas, P., Esmael, A., Agarkova, I., Dunigan, D., Chiodo, F., de castro, C. and Van Etten, J., 2024, April. Chlorovirus Glycoproteins and SOD1G93A Significantly Enhance, While Cellular Proteins IRF3 and ERK MAP-kinase Significantly Dampen, Production of ALS-associated Inflammatory Factors from Murine Macrophages (P6-11.017). In Neurology (Vol. 102, No. 17_supplement_1, p. 6794). Hagerstown, MD: Lippincott Williams & Wilkins.
Qin, Ping, et al. "Vitamin E biofortification: enhancement of seed tocopherol concentrations by altered chlorophyll metabolism." Frontiers in Plant Science 15 (2024): 1344095.
Quattrone, A., Lopez‐Guerrero, M., Yadav, P., Meier, M.A., Russo, S.E. and Weber, K.A., 2024. Interactions between root hairs and the soil microbial community affect the growth of maize seedlings. Plant, Cell & Environment, 47(2), pp.611-628.
Rodene, E., Fernando, G.D., Piyush, V., Ge, Y., Schnable, J.C., Ghosh, S. and Yang, J., 2024. Image Filtering to Improve Maize Tassel Detection Accuracy Using Machine Learning Algorithms. Sensors, 24(7), p.2172.
Sahay S, Grzybowski M, Schnable JC, Głowacka K. Genotype-specific nonphotochemical quenching responses to nitrogen deficit are linked to chlorophyll a to b ratios. J Plant Physiol. 2024 Jun;297:154261. doi: 10.1016/j.jplph.2024.154261. Epub 2024 May 1. PMID: 38705078.
Sahay, S., Shrestha, N., Dias, H.M., Mural, R.V., Grzybowski, M., Schnable, J.C. and Głowacka, K., 2024. Nonphotochemical quenching kinetics GWAS in sorghum identifies genes that may play conserved roles in maize and Arabidopsis thaliana photoprotection. The Plant Journal. 119: 3000-3014.
Sandhu, J., Irvin, L., Chandaran, A.K., Oguro, S., Paul, P., Dhatt, B., Hussain, W., Cunningham, S.S., Quinones, C.O., Lorence, A. and Adviento-Borbe, M.A.,...Walia, H. 2024. Natural variation in LONELY GUY-Like 1 regulates rice grain weight under warmer night conditions. Plant Physiology, p.kiae313.
Shomo, Z.D., Li, F., Smith, C.N., Edmonds, S.R. and Roston, R.L., 2024. From sensing to acclimation: The role of membrane lipid remodeling in plant responses to low temperatures. Plant Physiology, p.kiae382.
Shomo, Z.D., Mahboub, S., Vanviratikul, H., McCormick, M., Tulyananda, T., Roston, R.L. and Warakanont, J., 2024. All members of the Arabidopsis DGAT and PDAT acyltransferase families operate during high and low temperatures. Plant Physiology, 195(1), pp.685-697.
Surber, S.M., Thien Thao, N.P., Smith, C.N., Shomo, Z.D., Barnes, A.C. and Roston, R.L., 2024. Exploring cotton SFR2’s conundrum in response to cold stress. Plant Signaling & Behavior, 19(1), p.2362518.
Torres‐Rodríguez, J.V., Li, D., Turkus, J., Newton, L., Davis, J., Lopez‐Corona, L., Ali, W., Sun, G., Mural, R.V., Grzybowski, M.W. and Zamft, B.M., 2024. Population‐level gene expression can repeatedly link genes to functions in maize. The Plant Journal.
Tross, M.C., Grzybowski, M.W., Jubery, T.Z., Grove, R.J., Nishimwe, A.V., Torres‐Rodriguez, J.V., Sun, G., Ganapathysubramanian, B., Ge, Y. and Schnable, J.C., 2024. Data driven discovery and quantification of hyperspectral leaf reflectance phenotypes across a maize diversity panel. The Plant Phenome Journal, 7(1), p.e20106.
Turc, B., Sahay, S., Haupt, J., de Oliveira Santos, T., Bai, G. and Glowacka, K., 2024. Non-photochemical quenching upregulation improves water use efficiency and reduces whole plant level water consumption under drought. Journal of Experimental Botany, pp.erae113-erae113.
Villalobos, Jose A., et al. "Glucosylceramides impact cellulose deposition and cellulose synthase complex motility in Arabidopsis." Glycobiology 34.6 (2024): cwae035.
Wang, H., Zhao, X., Tan, L., Zhu, J. and Hyten, D., 2024. Crop DNA extraction with lab-made magnetic nanoparticles. Plos one, 19(1), p.e0296847.
Wang, J., Kan, S., Kong, J., Nie, L., Fan, W., Ren, Y., Reeve, W., Mower, J.P. and Wu, Z., 2024. Accumulation of large lineage-specific repeats coincides with sequence acceleration and structural rearrangement in Plantago plastomes. Genome biology and evolution, 16(8), p.evae177.
Wang, R., Gamon, J.A., Russo, S.E., Nishimwe, A.V., Ellerman, H. and Wardlow, B., 2024. Multitemporal airborne imaging spectrometry and fluorometry reveal contrasting photoprotective responses of trees. Remote Sensing of Environment, 311, p.114295.
Wang, Shuo, et al. "Chromosome-level assembly and analysis of Camelina neglecta: a novel diploid model for Camelina biotechnology research." Biotechnology for Biofuels and Bioproducts 17.1 (2024): 17.
Wei, X., Chen, M., Zhang, Q., Gong, J., Liu, J., Yong, K., Wang, Q., Fan, J., Chen, S., Hua, H. ... Yang, Jinliang, ... and Luo, Z., 2024. Genomic investigation of 18,421 lines reveals the genetic architecture of rice. Science, 385(6704), p.eadm8762.
Whitman, M. and Russo, S.E., 2024. Biogeographic affiliation and centers of richness as predictors of elevational range‐size patterns for Malesian flora. Ecography, 2024(5), p.e07043.
Xiaoming He, Danning Wang, Yong Jiang, Meng Li, Manuel Delgado-Baquerizo, Chloee McLaughlin, Caroline Marcon, Li Guo, Marcel Baer, Yudelsy AT Moya, Nicolaus Von Wirén, Marion Deichmann, Gabriel Schaaf, Hans-Peter Piepho, Zhikai Yang, Jinliang Yang, Bunlong Yim, Kornelia Smalla, Sofie Goormachtig, Franciska T de Vries, Hubert Hüging, Mareike Baer, Ruairidh JH Sawers, Jochen C Reif, Frank Hochholdinger, Xinping Chen, Peng Yu, 2024. Heritable microbiome variation is correlated with source environment in locally adapted maize varieties. Nature Plants, 10(4), pp.598-617.
Xu, Chunhui, et al. "FatPlants: a comprehensive information system for lipid-related genes and metabolic pathways in plants." Database 2024 (2024): baae074.
Yang, Y. and Russo, S.E., 2024. Trade‐offs in rooting strategy dimensions along an edaphic gradient in a grassland ecosystem. Functional Ecology, 38(4), pp.792-807.
Yang, Z., Zhao, T., Cheng, H. and Yang, J., 2024. Microbiome-enabled genomic selection improves prediction accuracy for nitrogen-related traits in maize. G3: Genes, Genomes, Genetics, 14(3), p.jkad286.
Zarei, A., Li, B., Schnable, J.C., Lyons, E., Pauli, D., Barnard, K. and Benes, B., 2024. PlantSegNet: 3D point cloud instance segmentation of nearby plant organs with identical semantics. Computers and Electronics in Agriculture, 221, p.108922.
Zhan, Y., Zhou, Y., Bai, G. and Ge, Y., 2024. Bagging Improves the Performance of Deep Learning-Based Semantic Segmentation with Limited Labeled Images: A Case Study of Crop Segmentation for High-Throughput Plant Phenotyping. Sensors, 24(11), p.3420.
Zhang, C., Gu, R., Lin, L. and Russo, S.E., 2024. Functional traits and ecological niches as correlates of the interspecific growth–mortality trade‐off among seedlings of 14 tropical tree species. Functional Ecology, 38(9), pp.1888-1901.
Zhang, Q., Yang, Z. and Yang, J., 2024. Dissecting the colocalized GWAS and eQTLs with mediation analysis for high-dimensional exposures and confounders. Biometrics, 80(2), p.ujae050.
Zheng, R., Jia, Y., Ullagaddi, C., Allen, C., Rausch, K., Singh, V., Schnable, J.C. and Kamruzzaman, M., 2024. Optimizing feature selection with gradient boosting machines in PLS regression for predicting moisture and protein in multi-country corn kernels via NIR spectroscopy. Food Chemistry, p.140062.
Zhong, Z.P., Zablocki, O., Li, Y.F., Van Etten, J.L., Mosley-Thompson, E., Rich, V.I., Thompson, L.G. and Sullivan, M.B., 2024. Glacier-preserved Tibetan Plateau viral community probably linked to warm–cold climate variations. Nature Geoscience, pp.1-8.
Zhou, B., Yu, H., Xue, Y., Li, M., Zhang, C. and Yu, B., 2024. The spliceosome-associated protein CWC15 promotes miRNA biogenesis in Arabidopsis. Nature Communications, 15(1), p.2399.
Zhou, S., Ma, K., Mower, J.P., Liu, Y. and Zhou, R., 2024. Leaf variegation caused by plastome structural variation: an example from Dianella tasmanica. Horticulture Research, 11(3), p.uhae009.
Zwonitzer, K.D., Tressel, L.G., Wu, Z., Kan, S., Broz, A.K., Mower, J.P., Ruhlman, T.A., Jansen, R.K., Sloan, D.B. and Havird, J.C., 2024. Genome copy number predicts extreme evolutionary rate variation in plant mitochondrial DNA. Proceedings of the National Academy of Sciences, 121(10), p.e2317240121.